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Latest build 4.3.02 on 18 December 2014 If you would like to get included upon an MClust-4.0 optin list of bug reports, please send a message to ADR with MClust-4.0-registration within the header. The only messages which will go to this email list are going to be sent by ADR and may refer to data-level bugs in MClust. We propose that all users use MClust-4.3. MClust incorporates a completely rebuilt engine that's now suitable for the latest versions of Matlab 2012a. Unfortunately, it just isn't compatible with earlier versions of Matlab. Version 4.2 contains bug fixes. Note: MClust assumes that details are stored in Matlab double format. Note: MClust should use 4-trode data, but I never have tested it yet. Neuralynx. dat format, tetrodes contained in current distribution Neuralynx. dat format, singe electrodes built into current distribution MClust-4.1 now incorporates a Tucker-Davis Technologies TDT loading engine. Using this loading engine requires additional programs from TDT to study the raw data formats. Contact TDT for download and password information. ginputSmooth.m - Rather than storing the mouse position for each click, the consumer clicks once to start and also the mouse position is stored continuously till the button is released. This utilizes a mouse, but is usually great which has a pen mouse and tablet. From Ben Kanter Kentros Lab. To use, replace xg, yg ginput ; with xg, yg ginputSmooth ; in MClustMClustCutter DrawPolygonOnAxes.m These contain some small data sets. I have made no attempt to find the very best examples, nevertheless they should load in appropriately. They may be used to test loading, cutting, and saving functions. Original MClust by A. David Redish ADR, current address, University of Minnesota, Minneapolis MN. Modifications which have been incorporated into version 3.2 were made by Peter Lipa PL, University of Arizona, Tucson AZ Stephen Cowen SLC, University of Arizona, Tucson AZ, Jadin Jackson JCJ, University of Minnesota, Minneapolis MN, Neil Schmitzer-Torbert NCST, University of Minnesota, Minneapolis MN, Francesco Battaglia batta, University of Arizona, Tucson AZ. BubbleClust automated spike-sorter, version 0.8 by Peter Lipa University of Arizona, Tucson AZ. Contact Neuralynx for future versions of BubbleClust. KlustaKwik automated spike-sorter by Ken Harris, Rutgers University, Newark NJ. Frolov NTNU: We noticed that beginning from Matalb 2014b when Mathworks changed the graphics engine adding limits to clusters during manual cut started for being very slow and unresponsive. The problem is in ginput function functioning on a figure with numerous points. A fix which I applied and which seems to operate is setting HitTest property of displayed objects to off. For example, in file MClustMClust ClusterTypes CvxHullCluster PlotSelf.m: h scatter ax, xtemp, ytemp, self. The same carried out to plot functions from the same file as well as in MClustMClust ClusterTypes DisplayableCluster PlotSelf.m MClust versions we tested this in were 4.1 and 4.3. ADR: This just isn't faster in earlier versions of matlab 2012a-2014a, but may very well be faster in 2014b. This version incorporates changes from previous versions and is particularly now works with the latest versions of Matlab 2007a. Unfortunately, it will not be compatible with earlier versions of Matlab. To begin using these, add them the spot that the mex32 files are. It will not be necessary to switch 32 files with all the 64 files. Matlab uses the correct ones. Neuralynxs Cheetah 5.X incorporates a deeper bit-depth than earlier versions of Cheetah. To accommodate this bit depth, you must change the global variable MClustResetGlobals to 16 its old value. We recommend using MClust-3.4 for those users of Matlab versions prior to when 2007a. Jadin Jackson University of Amsterdam is rolling out a new version of MClust 3.4 with multi-step undo and incorporated ICA. MClust-3.5 Extras. Extra features and other components for MClust-3.5. A amount of extra components are incorporated into various subdirectories under Extras. Simply move these from your Extras directory on their respective parent directory to work with. ginputSmooth.m - Rather than storing the mouse position for each click, an individual clicks once to start plus the mouse position is stored continuously prior to the button is released. This utilizes a mouse, but can also be great using a pen mouse and tablet. RemoveDoubles removes double-counted spikes. To use, put from the mccluster directory. including CloseAllNonEssentialFigs, ShowAllWaveforms, SortClustersByColor including CutOnBestProjection, FindBestCQProjections These extras are yet to been tested with MClust-3.5. new GeneralizedCutterOptions including ShowAllAverageWaveforms, ShowAllXCorrs, ViewAllDimensionPairs new Loading Engine allowing 32 samples from Neuralynx 32-kHz CSCs from Michael Krause Baylor College of Medicine, Houston new Loading Engines from Frank Schaupp Institut fur Neurobiologie, Berlin new Loading Engine from Shane Heiney Washington University in St. Louis Linux-compatible LoadSE and LoadST engines for Neuralynx - compatible data. Courtesy Josh Jacobs, Brandeis University Courtesy Baldwin Goodell, Montana State University pre-compiled mexglx and mexmac files Courtesy Baldwin Goodell, Montana State University new features Courtesy Baldwin Goodell, Montana State University Port to Linux. Done by Nathaniel Daw, Carnegie Mellon University. 28 August 2002 Written by A. David Redish It is important that any loading engine pull data in as Matlab double format floating point data. This is the usual format that Matlab functions for floating point numbers. If info is stored in an alternative format say as unsigned ints or as single-floats then some from the mex - files may segfault. I have added code-checks to make sure that data formats are doubles. I believe that this currently supplied loading engines produce these formats. The latest versions of Neuralynx can establish very large timestamps. To ensure that your data could be saved with those large timestamps, modify the MClust Extension flag to.t64. This will save t-files using 64-bit uints and may use the.t64 extension to label them consequently. To alter the compare average waveforms using overlapped waveforms between clusters and separated waveforms for every cluster, affect the OnePlot flag in MClustCutter CutterOtionCompareAverageWaveforms.m to true. If you'll need the full resolution of 64-bit from Neuralynx or some other engine, you'll save data as.t64. Just customize the extension in MClustSettings. If you would like being included while on an MClust - 4.0 opt-in list of bug reports, please send an e-mail to ADR with MClust - 4.0-registration inside header. The only messages that may go to this email list are going to be sent by ADR and may refer to data-level bugs in MClust. We advise that all users use MClust - 4.3. MClust - 4.1 now has a Tucker-Davis Technologies TDT loading engine. Using this loading engine requires additional programs from TDT to learn the raw data formats. Contact TDT for download and password information. ginputSmooth.m - Rather than storing the mouse position for any click, anyone clicks once to start as well as the mouse position is stored continuously till the button is released. This works for a mouse, but is usually great that has a pen mouse and tablet. From Ben Kanter Kentros Lab. To use, replace xg, yg ginput ; with xg, yg ginputSmooth ; in MClust MClust Cutter DrawPolygonOnAxes.m Frolov NTNU: We noticed that beginning Matalb 2014b when Mathworks changed the graphics engine adding limits to clusters during manual cut started to get very slow and unresponsive. The problem is in ginput function functioning on a figure with many different points. A fix which I applied and which seems to operate is to put HitTest property of displayed objects to off. For example, in file MClust MClust ClusterTypes The same carried out to plot functions inside the same file and in MClust MClust ClusterTypes DisplayableCluster PlotSelf.m ADR: This isn't faster in earlier versions of matlab 2012a - 2014a, but may very well be faster in 2014b. 64 files for XP64 and Vista64 os's. Thanks to Jadin Jackson for compiling these. To start using these, add them the place that the mex32 files are. It just isn't necessary to change 32 files using the 64 files. Matlab use the correct ones. Neuralynxs Cheetah 5.X incorporates a deeper bit - depth than earlier versions of Cheetah. To accommodate this bit depth, you must change the global variable We recommend using MClust - 3.4 for many users of Matlab versions prior to when 2007a. MClust - 3.5 Extras. Extra features and other components for MClust - 3.5. These extras have never been tested with MClust - 3.5. The latest versions of Neuralynx can establish very large timestamps. To ensure that your data might be saved with those large timestamps, customize the MClust Extension flag to.t64. This will save t-files using 64 - bit uints and can use the.t64 extension to label them as a result. To alter the compare average waveforms using overlapped waveforms between clusters and separated waveforms per cluster, customize the OnePlot flag in MClust Cutter CutterOtionCompareAverageWaveforms.m to true. If you will need the full resolution of 64 - bit from Neuralynx or some other engine, you save data as.t64. Just affect the extension in MClustSettings.

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